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Cluster Documentation
eResearch Support
Cluster Documentation
Research HPC Cluster (Aoraki) Documentation
Getting Started
Getting Started
Access
Access
Access Overview
Getting an Account
Account and Allocation Management
Account and Allocation Management
Allocation Management
Viewing Current Status
Accessing the login node (ssh)
OnDemand Web portal
Data transfer
Data transfer
Data Transfer Overview
Globus
scp or rsync
Software
Software
onDemand
onDemand
Open OnDemand
Using the Open OnDemand File Manager
OnDemand HPC Desktop
Accessing the Shell through Open OnDemand
Available Apps
Applications
Applications
4ti2
AFNI (Analysis of Functional NeuroImages)
AlphaFold
Alphafold3
Ansys Fluent
Bohra
CCP4
Circlator
GLOBEClaritas
ColabFold
Connectome Workbench
Crystal
DeepLabCut
DeepPoseKit
Dorado
fMRIPrep (Containerised)
FSL
Gaussian
Gubbins
Guppy (GPU)
HUMAnN 3.0
Macaulay2
Mathematica
MATLAB
Ollama
Openprose
ORCA
PyTorch via module
Samtools
Space Ranger
TBProfiler
Whisper (speech-to-text)
xdsguI
Software environments
Software environments
Apptainer (Singularity)
Conda/Mamba
Using Modules (LMOD)
Renv (R package environments)
SBGrid
Shells (bash, zsh, fish, tcsh)
Spack
Python virtual environments
Running Jobs
Running Jobs
Running Jobs Overview
Interactive
Interactive
Interactive Jobs
Interactive job efficiency
Launch desktop
Batch
Batch
Slurm Quickstart Outline
Using slurm
Using slurm
Define job
Slurm Overview
Submit job
Slurm examples
Slurm examples
Array Jobs
Dependent Jobs
Using a GPU with Slurm
Heterogeneous Jobs
Interactive Jobs
Using Python with Slurm
Using R with Slurm
Job Efficiency
Current utilisation
Workflows
Workflows
Nextflow
Project setup
Project setup
Project setup
Bioinformatics software
Rstudio
General
General
Research HPC Cluster (Aoraki)
Announcements
Announcements
April 2025 Maintenance
November 2024 Maintenance
Guidelines
Guidelines
Login Node Usage
Reasonable Usage
Storage
Changelogs
Changelogs
April 2025
November 2024
May 2024
FAQ
FAQ
How much disk storage am I using?
Exceeding quota
How long do I have to wait for my job to start?
Jobs Failing
Support
Storage
Storage
Storage Overview
File permissions
Data Locations
Data Locations
Homes
Projects
Weka
Otago HCS (High Capacity Storage)
Storage
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